Package: dycdtools 0.4.4

dycdtools: Calibration Assistant and Post-Processing Tool for Aquatic Ecosystem Model DYRESM-CAEDYM

Dynamic Reservoir Simulation Model (DYRESM) and Computational Aquatic Ecosystem Dynamics Model (CAEDYM) model development, including assisting with calibrating selected model parameters and visualising model output through time series plot, profile plot, contour plot, and scatter plot. For more details, see Yu et al. (2023) <https://journal.r-project.org/articles/RJ-2023-008/>.

Authors:Songyan Yu [aut, cre], Christopher McBride [ctb], Marieke Frassl [ctb]

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dycdtools/json (API)
NEWS

# Install 'dycdtools' in R:
install.packages('dycdtools', repos = c('https://songyanyu.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/songyanyu/dycdtools/issues

Datasets:
  • obs_temp - Example observed profiling temperature data across different depths over the period of 6-11 June 2017.
  • output_name - Default DYCD simulation variable names with their variable name

On CRAN:

3.18 score 1 stars 9 scripts 261 downloads 10 exports 42 dependencies

Last updated 2 months agofrom:571dcd59d8. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:calib_assistchange_input_fileext_outputinterpolobjective_funplot_contplot_cont_compplot_profplot_scatterplot_ts

Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellncdf4nlmepillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Assist calibration of DYRESM-CAEDYM model.calib_assist
Change parameter value of input files to DYRESM_CAEDYM model.change_input_file
Delete all whitespace until a non-whitespace character.delete_space
Extract outputs from a DYRESM-CAEDYM model runext_output
convert from height to depthhgt_to_dpt
Interpolation of DYRESM-CAEDYM simulation results across a series of user-defined depths.interpol
Calculate statistical measures of goodness of fit for DYRESM-CAEDYM model simulations.objective_fun
Example observed profiling temperature data across different depths over the period of 6-11 June 2017.obs_temp
Default DYCD simulation variable names with their variable nameoutput_name
Contour plot of only simulation results of a water quality variable.plot_cont
Contour plot of DYRESM-CAEDYM simulation outputs of a water quality variable, with observed data shown as dots in the generated contour plot.plot_cont_comp
A post-processing function used to visualise model output in a profile graph.plot_prof
Scatter plot of the simulation and observation of a water quality variable. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.plot_scatter
Time series plot of simulated and observed values at target depths. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.plot_ts
Internal function to provide parallel processing support to the calibration assistant function.run_iteration