Package: dycdtools 0.4.4

dycdtools: Calibration Assistant and Post-Processing Tool for Aquatic Ecosystem Model DYRESM-CAEDYM

Dynamic Reservoir Simulation Model (DYRESM) and Computational Aquatic Ecosystem Dynamics Model (CAEDYM) model development, including assisting with calibrating selected model parameters and visualising model output through time series plot, profile plot, contour plot, and scatter plot. For more details, see Yu et al. (2023) <https://journal.r-project.org/articles/RJ-2023-008/>.

Authors:Songyan Yu [aut, cre], Christopher McBride [ctb], Marieke Frassl [ctb]

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dycdtools/json (API)
NEWS

# Install 'dycdtools' in R:

install.packages('dycdtools', repos = c('https://songyanyu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/songyanyu/dycdtools/issues

Datasets:

obs_temp - Example observed profiling temperature data across different depths over the period of 6-11 June 2017.
output_name - Default DYCD simulation variable names with their variable name

On CRAN:

10 exports 1 stars 0.93 score 42 dependencies 9 scripts 158 downloads

Last updated 9 days agofrom:7ae0c8c469. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 14 2024
R-4.5-win	OK	Sep 14 2024
R-4.5-linux	OK	Sep 12 2024
R-4.4-win	OK	Sep 14 2024
R-4.4-mac	OK	Sep 14 2024
R-4.3-win	OK	Sep 14 2024
R-4.3-mac	OK	Sep 14 2024

Exports:calib_assist change_input_file ext_output interpol objective_fun plot_cont plot_cont_comp plot_prof plot_scatter plot_ts

Dependencies:cli colorspace cpp11 dplyr fansi farver generics ggplot2 glue gtable isoband labeling lattice lifecycle lubridate magrittr MASS Matrix mgcv munsell ncdf4 nlme pillar pkgconfig purrr R.methodsS3 R.oo R.utils R6 RColorBrewer rlang scales stringi stringr tibble tidyr tidyselect timechange utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Assist calibration of DYRESM-CAEDYM model.	calib_assist
Change parameter value of input files to DYRESM_CAEDYM model.	change_input_file
Delete all whitespace until a non-whitespace character.	delete_space
Extract outputs from a DYRESM-CAEDYM model run	ext_output
convert from height to depth	hgt_to_dpt
Interpolation of DYRESM-CAEDYM simulation results across a series of user-defined depths.	interpol
Calculate statistical measures of goodness of fit for DYRESM-CAEDYM model simulations.	objective_fun
Example observed profiling temperature data across different depths over the period of 6-11 June 2017.	obs_temp
Default DYCD simulation variable names with their variable name	output_name
Contour plot of only simulation results of a water quality variable.	plot_cont
Contour plot of DYRESM-CAEDYM simulation outputs of a water quality variable, with observed data shown as dots in the generated contour plot.	plot_cont_comp
A post-processing function used to visualise model output in a profile graph.	plot_prof
Scatter plot of the simulation and observation of a water quality variable. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.	plot_scatter
Time series plot of simulated and observed values at target depths. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.	plot_ts
Internal function to provide parallel processing support to the calibration assistant function.	run_iteration